| javawrapper::Allometry | This holds all data relating to allometry |
| javawrapper::AnalysisBehaviors | Manages analysis behaviors and data |
| javawrapper::BatchFileParser | SAX batch file parse handler |
| javawrapper::BatchParFile | Encapsulates a parameter file and the number of times to run it |
| javawrapper::BatchSetup | Window for working with batch files |
| javawrapper::Behavior | Represents a single behavior in the core |
| javawrapper::BehaviorTypeBase | This class functions as an organizer for model-level behaviors |
| datavisualizer::CarbonValueDataRequest | Produces a table of carbon value results |
| javawrapper::Cell | This class holds a set of grid cell coordinates |
| javawrapper::ComboBoxRenderer | This limits values displayed in the file choices combo box to 50 characters (the last 50, so filenames are displayed) |
| javawrapper::CutRange | This class defines a cut range for a harvest event |
| datavisualizer::DataFileFilter | This provides a filter for data files - .out, .xml, and .gz files |
| javawrapper::DataFileFilter | This provides a filter for data files - .out, .xml, and .gz files |
| datavisualizer::DataFileManager | This class manages a single data file for the data visualizer |
| datavisualizer::DataGrapher | Objects of this class can create graphs of various kinds, given data |
| javawrapper::DataMember | An object of this class represents a data member from a grid or tree |
| javawrapper::DataMemberData | Abstract class holding data member-based data, such as trees or grid values |
| datavisualizer::DataRequest | This class is used by the DetailedOutputFileManager class to manage open requests for data |
| javawrapper::DataVisualizerManager | This class takes care of managing data visualization |
| datavisualizer::DesktopListener | This class listens for the movement of desktop frames and resizes the desktop as necessary to make sure every part of it is reachable by scrolling |
| javawrapper::DetailedGridSettings | Captures the output settings for a single grid |
| datavisualizer::DetailedOutputFileManager | Controls the data visualization for a single detailed output file |
| javawrapper::DetailedOutputFileSetup | Window that the user uses to set up detailed output options |
| javawrapper::DetailedOutputFileSetup_this_windowAdapter | Triggers refresh of save information on window focus |
| datavisualizer::DetailedOutputFileSetupParseHandler | Plugs into the Xerces SAX parser to handle the incoming data when the detailed output setup XML file is parsed |
| javawrapper::DetailedOutputGridRenderer | This renders choices in a JList so that, if they have a prepended "(p)" string, it is not shown to the user |
| javawrapper::DetailedOutputGridSetup | Window the user uses to set up detailed output options for grids |
| datavisualizer::DetailedOutputLegend | This extends the legend class and adds some features specific to the viewing of detailed output files - specifically the ability to step through timesteps |
| javawrapper::DetailedOutputSettings | Base class for detailed output settings |
| datavisualizer::DetailedOutputTimestepParseHandler | An object of this class will parse detailed output timestep files and pass the data to a DetailedOutputFileManager object |
| javawrapper::DetailedOutputTreeSetup | Window used by the user to set up detailed output tree output options |
| javawrapper::DetailedTreeSettings | This class packages together a set of tree settings |
| javawrapper::Diam10Edit | For editing initial diam10s for planting |
| javawrapper::DisperseBehaviors | This is the organizer class for all disperse behaviors |
| javawrapper::DisplayParameters | Displays a window with parameter data for the user to edit |
| javawrapper::DisturbanceBehaviors | This class manages data for disturbance behaviors |
| javawrapper::EnhancedTable | Provides extensions and customizations for JTable |
| javawrapper::EnhancedTableWindow | Interface for classes wishing to use the EnhancedTable class |
| javawrapper::EpisodicEventsEdit | Base class for windows for episodic event editing |
| javawrapper::EpisodicEventsMouseListener | Class for interpreting mouse clicks on the chart for selecting cells for episodic event editing |
| javawrapper::EpisodicEventsWindow | Displays episodic events and allows for editing |
| javawrapper::ErrorGUI | This class handles all error message writing |
| javawrapper::EstablishmentBehaviors | This is the organizer class for all establishment behaviors |
| javawrapper::FileOpenFilter | This provides a file filter which shows all potential SORTIE file types: .xml, .hvr, .txt, and .gz.tar files |
| datavisualizer::GrayscaleListener | Performs the action when the checkbox for using logarithmic axis is checked on a histogram |
| javawrapper::Grid | This class represents grids in the core model |
| datavisualizer::GridDataRequest | Draws a map for a single grid's data member |
| datavisualizer::GridHistogramDataRequest | This controls the drawing of a histogram for a single piece of grid information |
| javawrapper::GridSetup | Displays grid settings for editing |
| javawrapper::GridValue | Class for holding the data for a single grid cell |
| javawrapper::GridValueEditor | Window for editing grid values in a spreadsheet-like format |
| javawrapper::GrowthBehaviors | Controls the data relating to growth behaviors |
| javawrapper::GUIManager | The GUI manager provides all behind-the-scenes functionality for the Main Window |
| javawrapper::HarvestData | This class encapsulates the data for a single harvest event - being for one timestep, for one cut type |
| datavisualizer::HarvestDataRequest | Produces a table of harvest or mortality episode results |
| javawrapper::HarvestEdit | Window for harvest editing |
| datavisualizer::HistogramBin | Copied from HistogramBin in JFreeChart by Jelai Wang with some modifications |
| datavisualizer::HistogramDataRequest | This controls the drawing of a histogram for a single piece of information |
| javawrapper::Interface | Interface between the Java GUI and the C++ application core |
| datavisualizer::Legend | This is an internal frame which displays a color legend for species-based charts |
| datavisualizer::Legend_CheckBox_actionAdapter | Triggers species changes when the user clicks species checkboxes |
| datavisualizer::Legend_ColorChooserButton_actionAdapter | Triggered when the user clicks a color button |
| javawrapper::LightBehaviors | Manages data for the light behaviors |
| datavisualizer::LineGraphDataRequest | Creates different types of line graphs for detailed output files |
| javawrapper::MainWindow | Main application window |
| javawrapper::MainWindow::RunListener | Runs the window's timer code while the C++ core is running |
| javawrapper::MainWindowStateSetter | The purpose of this class is to control the states of the main window - all the enabling and disabling, etc |
| datavisualizer::MerchValueDataRequest | Produces a table of merchantable timber value results |
| javawrapper::Model | Main class that's called to start the application |
| javawrapper::ModelData | This is a base class for packaging data values with additional information |
| datavisualizer::ModelDataset | This encapsulates any kind of a chart dataset with a string to match it to its chart window |
| javawrapper::ModelEnum | Packages a data value with other information |
| javawrapper::ModelException | Model exception class |
| javawrapper::ModelFileFunctions | This provides common file-reading functions for reading tab-delimited files |
| javawrapper::ModelFloat | This class packages float values with additional information |
| javawrapper::ModelFlowSetup | Allows users to make changes to the model flow and behavior order |
| javawrapper::ModelFlowSetup::BehaviorIndexer | Class which packages individual behavior names with an index number |
| javawrapper::ModelFlowSetup::ComboDisplay | Combines a text description of species/type combos with the actual data, for display in lists |
| javawrapper::ModelFlowSetup::DisplayBehaviorComboEdit | Displays an edit window for editing the tree species/type combos to which a single behavior applies |
| javawrapper::ModelFlowSetup::DisplayBehaviorEdit | Displays the edit window for editing behavior order |
| javawrapper::ModelFlowSetup::DisplayBehaviorEdit::AddDoubleClicker | This class implements the double-click so that double-clicking on behavior names adds the behavior to the list |
| javawrapper::ModelFlowSetup::DisplayBehaviorEdit::ModifyDoubleClicker | This class implements the double-click so that double-clicking on behavior names launches the behavior combo editor |
| javawrapper::ModelFlowSetup::DisplayComboEdit | Displays the edit window for editing behavior flow for a tree species/ type combo |
| javawrapper::ModelFlowSetup::DisplayComboEdit::AddDoubleClicker | This class implements the double-click so that double-clicking on behavior names adds the behavior to the list |
| javawrapper::ModelFlowSetup::ListRenderer | Provides multi-line text wrapping to our list boxes |
| javawrapper::ModelFlowSetup::TreeNodeInfo | Objects set in tree nodes to give information about what to do when the user clicks a node |
| javawrapper::ModelFont | The common font for all GUI elements |
| datavisualizer::ModelHistogramDataset | This is a hack of the HistogramDataset in JFreeChart |
| javawrapper::ModelIcon | Creates different icons needed by the model |
| javawrapper::ModelInt | This class packages integer values with additional data |
| javawrapper::ModelMessage | Structure for message passing |
| javawrapper::ModelString | Packages a String value together with additional data |
| javawrapper::ModelVector | This class packages vector data with other pieces of information important to the model |
| javawrapper::MortalityBehaviors | Manages mortality behaviors and data |
| javawrapper::MortalityEpisodeEdit | Window for mortality episode editing |
| javawrapper::MultilineLabel | Renders a multi-line "JLabel" |
| javawrapper::OKCancelButtonPanel | A panel containing OK, Cancel, and Help buttons |
| javawrapper::OutFileFilter | File filter for short output files |
| javawrapper::OutputBehaviors | Manages output behaviors and data |
| javawrapper::OutputSetup | Window used by the user to start setting up run output options |
| javawrapper::OutputSetup_this_windowAdapter | Allows us to refresh the saving information on window focus |
| datavisualizer::OverviewTableDataRequest | Writes an overview table for a detailed output file (basal area and density for each life history stage) |
| javawrapper::PackageGridValue | Class for holding the data for a single package |
| javawrapper::ParameterCellEditor | Handles the editing for the file parameter table |
| javawrapper::ParameterEdit | Window used to trigger the parameter editing process |
| javawrapper::ParameterFileParser | SAX parameter file parse handler |
| javawrapper::ParameterTableModel | Table model for the parameter data table |
| javawrapper::ParameterTextRenderer | Renders the first column values in a table to bold font with word wrapping to multiple lines |
| javawrapper::ParseReader | Processes SAX parser output |
| javawrapper::PlantEdit | Window for planting editing |
| javawrapper::PlantingBehaviors | Manages planting behaviors and data |
| javawrapper::PlantingData | This class encapsulates the data for a single planting event - being for one species, for one timestep |
| javawrapper::PlantingData::PlantingAbundance | This encapsulates a species with its planting abundance |
| javawrapper::Plot | Plot object |
| javawrapper::Points | For listing points for GLI points calculations |
| javawrapper::QuickScrollingPanel | This class creates a JPanel that scrolls at a normal speed through a JScrollPane |
| javawrapper::RemoveDeadBehaviors | This is the organizer class for the dead remover behavor |
| javawrapper::SaxParseTools | |
| javawrapper::SeedPredationBehaviors | This class organizes the germination behavior |
| datavisualizer::ShortOutputFileManager | Manages all the data visualization for a single short output file |
| datavisualizer::ShortOutputFileManager::LineGraphFileWriter | Takes care of writing out a line graph's data |
| datavisualizer::ShortOutputFileManager::TableFileWriter | Writes out table data to file |
| javawrapper::SpeciesSpecific | This class will package together a data member and an array of booleans on which species uses it |
| javawrapper::SpeciesTypeCombo | This class allows you to group together a species number and a type number into one object that can be placed in an array or vector or passed as an argument |
| javawrapper::SpringUtilities | A 1.4 file that provides utility methods for creating form- or grid-style layouts with SpringLayout |
| datavisualizer::StandTableDataRequest | Writes a stand table for a detailed output file (basal area or density for each life history stage throughout the run) |
| datavisualizer::StockTableDataRequest | Writes a stock table for a detailed output file |
| javawrapper::Subplot | This rolls up a set of cell coordinates into a defined subplot |
| javawrapper::SubplotEdit | Window for editing subplot information |
| javawrapper::SubplotEdit::SubplotMouseListener | Class for interpreting mouse clicks on the chart for selecting cells for subplot editing |
| javawrapper::SubstrateBehaviors | Manages substrate data and behaviors |
| javawrapper::SummaryOutputFileSetup | Window used by the user to set up summary (short) output files |
| javawrapper::SwingWorker | * This is the 3rd version of SwingWorker (also known as SwingWorker 3), an abstract class that you subclass to perform GUI-related work in a dedicated thread |
| javawrapper::SwingWorker::ThreadVar | Class to maintain reference to current worker thread under separate synchronization control |
| datavisualizer::TableUpdater | Responds to the buttons in the overview table windows |
| javawrapper::Tarball | Functions for working with tarballs (.gz.tar files) |
| javawrapper::TextFileFilter | File filter for text files |
| javawrapper::Tree | Represents a single tree's data |
| datavisualizer::TreeMapDataRequest | This class manages the data for, and draws, tree maps |
| javawrapper::TreeOutputSaveInfo | This collects tree saving information for short output for one tree type |
| javawrapper::TreePopulation | This holds all data relating to the tree population |
| javawrapper::TreeSetup | Dialog allowing the user to set up basic tree information |
| javawrapper::TreeSetup::RenamePair | This class holds information about species renaming |
| javawrapper::TreeSetup::SizeClassEditor | Displays dialog for entering size class data |
| datavisualizer::WindstormDataRequest | Produces a table of windstorm results |
| javawrapper::WorkerBase | This class contains methods common to all objects that contain data |
| javawrapper::XMLFileFilter | This filters to only XML files for file choosers |
| datavisualizer::XYCellRenderer | This class fills in map cell rectangles on a plot |
| datavisualizer::XYTreeRenderer | A renderer that draws a circle at each data point |
| datavisualizer::XYZDataItem | Represents one (x, y, z) data item for an xyz-series |
| datavisualizer::XYZSeries | Represents a collection of XYZ data items |
| datavisualizer::XYZSeriesCollection | For creating an XYZ dataset |