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| | MicrotopographicSubstrateSeedSurvival (GUIManager oManager, BehaviorTypeBase oParent, String sDescriptor, String sParFileTag, String sXMLRootString) throws ModelException |
| | Constructor.
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| void | validateData (TreePopulation oPop) throws ModelException |
| | Validates data.
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| void | changeOfSpecies (int iOldNumSpecies, int[] p_iIndexer, String[] p_sNewSpecies) throws ModelException |
| | Sets up the grid again.
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| GUIManager | getGUIManager () |
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| | Behavior (GUIManager oManager, BehaviorTypeBase oParent, String sDescriptor, String sParFileTag, String sXMLRootString, String sHelpFileString) |
| | Constructor.
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| int | getNumberOfDataObjects () |
| | Gets the number of managed data objects.
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| ModelData | getDataObject (int iInd) |
| | Gets the managed data object at a particular index.
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| void | validate () throws ModelException |
| | Behavior performs an internal check to make sure its settings are consistent and logical.
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| void | setListPosition (int iListPosition) |
| | Sets the behavior list position.
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| int | getListPosition () |
| | Gets the behavior list position.
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| String | getXMLParametersRoot () |
| | Gets the XML parameter root string.
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| int | getNumberNewDataMembers () |
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| DataMember | getNewTreeDataMember (int iIndex) throws ModelException |
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| void | setCanApplyTo (int iType, boolean bCanApply) |
| | Sets whether this behavior can apply to a given tree type.
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| String | getParameterFileBehaviorName () |
| | Gets the parameter file name for this behavior.
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| double | getVersion () |
| | Gets behavior's parameter file version.
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| double | getMinimumVersion () |
| | Gets behavior's parameter file minimum version.
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| String | getDescriptor () |
| | Gets the descriptor string.
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| void | setDescriptor (String s) |
| | Sets the descriptor string.
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| int | getNumberOfCombos () |
| | Gets the number of species/type combos to which this behavior applies.
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| int | getNumberOfGrids () |
| | Gets the number of grids to which this behavior applies.
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| void | deleteSpeciesTypeCombo (int iIndex) throws ModelException |
| | Deletes the SpeciesTypeCombo at the given index.
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| void | clearSpeciesTypeCombos () |
| | Empties the species/type combo list.
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| SpeciesTypeCombo | getSpeciesTypeCombo (int iIndex) throws ModelException |
| | Returns the SpeciesTypeCombo at the given index of the species/type combo list.
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| Grid | getGrid (int iIndex) throws ModelException |
| | Returns the Grid at the given index of the grid applies to list.
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| ModelData | getRequiredData (int iIndex) |
| | Returns the required data object at a given index.
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| int | getNumberOfRequiredDataObjects () |
| | Gets the number of required data objects for this behavior.
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| void | addSpeciesTypeCombo (SpeciesTypeCombo oCombo) throws ModelException |
| | Adds a new species/type combo to the list to which this behavior applies.
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| void | addGrid (Grid oGrid) |
| | Adds a new Grid to the list to which this behavior applies.
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| void | addRequiredData (ModelData oData) |
| | Adds a piece of required data to the list.
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| boolean[] | getWhichSpeciesUsed (TreePopulation oPop) |
| | Returns which species to which this behavior is applied.
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| boolean | setVectorValueByXMLTag (String sXMLTag, String sXMLParentTag, Vector< String > p_oData, String[] p_sChildXMLTags, boolean[] p_bAppliesTo, Attributes oParentAttributes, Attributes[] p_oAttributes) throws ModelException |
| | Sets a data vector's value.
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| void | setVectorValues (ModelVector oData, Float[] p_fValuesToSet, boolean[] p_bAppliesTo) |
| | Sets the values for vector variables.
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| void | setVectorValues (ModelVector oData, Float[] p_fValuesToSet) |
| | Sets the values for vector variables.
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| void | setVectorValues (ModelVector oData, Double[] p_fValuesToSet, boolean[] p_bAppliesTo) |
| | Sets the values for vector variables.
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| void | setVectorValues (ModelVector oData, Double[] p_fValuesToSet) |
| | Sets the values for vector variables.
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| void | setVectorValues (ModelVector oData, Integer[] p_iValuesToSet, boolean[] p_bAppliesTo) |
| | Sets the values for vector variables.
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| void | setVectorValues (ModelVector oData, String[] p_sValuesToSet) |
| | Sets the values for vector variables.
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| void | setVectorValues (ModelVector oData, String[] p_sValuesToSet, boolean[] p_bAppliesTo) |
| | Sets the values for vector variables.
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| void | setVectorValues (ModelVector oData, Integer[] p_iValuesToSet) |
| | Sets the values for vector variables.
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| void | setVectorValues (ModelVector p_oData, Vector< String > p_oValuesToSet, boolean[] p_bAppliesTo) throws ModelException |
| | Sets the values for vector variables.
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| boolean | setSingleValueByXMLTag (String sXMLTag, String sXMLParentTag, Attributes oAttributes, Object oData) throws ModelException |
| | Sets a data object's value.
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| ModelData | findObjectByXMLTag (String sXMLTag) |
| | Finds an object based on its XML tag.
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| void | copySpecies (int iSpeciesCopyFrom, int iSpeciesCopyTo) throws ModelException |
| | Copies one species to another.
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| void | writeXML (BufferedWriter jOut, TreePopulation oPop) throws ModelException |
| | Writes the XML data to a parameter file for the behaviors owned by this object.
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| void | writeSpeciesSpecificValue (BufferedWriter jOut, ModelVector p_oData, TreePopulation oPop) throws java.io.IOException, ModelException |
| | Writes a set of species-specific float values to a parameter file.
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| void | writeSpeciesSpecificValue (BufferedWriter jOut, ModelVector p_oData, TreePopulation oPop, boolean[] p_bFlags) throws java.io.IOException, ModelException |
| | Writes a set of species-specific values to a parameter file for a certain subset of species.
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| void | readXMLParentTag (String sXMLTag, Attributes oAttributes) throws ModelException |
| | Accepts an XML parent tag (empty, no data) from the parser.
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| void | changeOfSpeciesName (String sOldSpecies, String sNewSpecies) |
| | Performs any necessary tasks associated with changing the name of a species.
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| void | changeOfSpecies (int iOldNumSpecies, int[] p_iIndexer, String[] p_sNewSpecies) throws ModelException |
| | Triggered when there is a change in the species list.
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| boolean | getAutoDisplayParameters () |
| | Gets whether to auto-display this object's parameters.
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| ModelData | findObjectByDescriptor (String sDescriptor) |
| | Finds an object based on its descriptor.
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| void | writeBehaviorNode (BufferedWriter out, TreePopulation oPop) throws ModelException |
| | Writes behavior tags to the parameter file.
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| BehaviorParameterDisplay | formatDataForDisplay (TreePopulation oPop) |
| | Formats data for display in a set of JTables.
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| void | readDataFromDisplay (Vector< TableData > p_oData, TreePopulation oPop) throws ModelException |
| | Reads in data from the parameter display window.
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| boolean | canBeDuplicated () |
| | Whether or not this behavior can be duplicated in the run.
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| boolean | canBeEditedAutomatically () |
| | Whether or not this behavior can be edited with the automatic parameter retrieval and editing tools.
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| void | endOfParameterFileRead () |
| | Called at the end of the parameter file read process.
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| void | changeOfPlotResolution (float fOldX, float fOldY, float fNewX, float fNewY) throws ModelException |
| | Performs any tasks associated with a change of plot resolution.
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| static void | writeDataToFile (BufferedWriter ojOut, ModelData oData) throws java.io. IOException |
| | Writes a piece of data to an XML file.
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| static Object[] | formatBlankHeaderRow (Object[][] p_oTable) |
| | Creates a blank header row for a table.
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| static Object[][] | formatDataAsComboBox (Object[][] p_oExisting, ModelEnum oToFormat) |
| | Adds a value with combo box formatting to an Object array for display in a JTable.
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| static String | formatComboBoxString (ModelEnum oToFormat) |
| | Formats a combo box string from a ModelEnum.
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| static void | addDataObjectToDisplayArrays (ModelData p_oDataObject, Vector< ModelData > p_oSingles, Vector< Vector< SpeciesSpecific >> p_oSpeciesSpecific, boolean[] p_bAppliesTo) |
| | Adds a data object to the arrays which will eventually display run parameters in a set of tables.
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| static Object[][] | addDataToArray (Object[][] p_oExistingArray, Object[] p_oAddArray) |
| | Adds an Object array to an existing Object array.
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| static Object[][] | formatDataForTable (Object[][] p_oExisting, ModelFloat oToFormat) |
| | Formats and adds a value into an Object array suitable for placing in a JTable.
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| static Object[][] | formatDataForTable (Object[][] p_oExisting, ModelInt oToFormat) |
| | Formats and adds a value into an Object array suitable for placing in a JTable.
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| static Object[][] | formatDataForTable (Object[][] p_oExisting, ModelString oToFormat) |
| | Formats and adds a value into an Object array suitable for placing in a JTable.
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| static Object[][] | formatDataForTable (Object[][] p_oExisting, ModelVector oToFormat) |
| | Formats a vector of values into an object array and adds it to another Object array suitable for placing in a JTable.
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| static Object[][] | formatDataForTable (Object[][] p_oExisting, ModelVector oToFormat, boolean[] p_bWhichSpecies) |
| | Formats a vector of values into a plain vector suitable for placing in a JTable and adds it to a vector of vectors at the end.
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| static Object[] | formatSpeciesHeaderRow (boolean[] p_bUsed, TreePopulation oPop) |
| | Creates an object array of strings consisting of species names, suitable for including in the parameter entry table.
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| boolean | m_bMustHaveTrees = true |
| | If true, and a tree has no species/type combos, it automatically becomes disabled.
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| void | setSingleValue (ModelData oDataMember, Object oData) throws ModelException |
| | Sets the value of a single data member.
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| BehaviorParameterDisplay | formatTable (Vector< ModelData > p_oSingles, Vector< Vector< SpeciesSpecific >> p_oSpeciesSpecific, TreePopulation oPop) |
| | Turns vector groups of data objects into a set of tables for display.
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| static boolean | boolArraysEqual (boolean[] p_bArrayOne, boolean[] p_bArrayTwo) |
| | Tests two boolean arrays for equality.
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Corresponds to the clSubstrateDepSeedSurvival class.
- Author
- lora