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| ShortOutput (GUIManager oManager, BehaviorTypeBase oParent, String sDescriptor, String sParFileTag, String sXMLRootString) |
| Constructor. More...
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void | validateData (TreePopulation oPop) throws ModelException |
| Validates the data before writing to a parameter file. More...
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boolean | setSingleValueByXMLTag (String sXMLTag, String sXMLParentTag, Attributes oAttributes, Object oData) throws ModelException |
| Sets a data object's value. More...
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boolean | setVectorValueByXMLTag (String sXMLTag, String sXMLParentTag, ArrayList< String > p_oData, String[] p_sChildXMLTags, boolean[] p_bAppliesTo, Attributes oParentAttributes, Attributes[] p_oAttributes) throws ModelException |
| Sets a data vector's value. More...
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void | readXMLParentTag (String sXMLTag, Attributes oAttributes) throws ModelException |
| Accepts an XML parent tag (empty, no data) from the parser. More...
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void | changeOfPlotResolution (float fOldX, float fOldY, float fNewX, float fNewY) throws ModelException |
| Removes cells from subplots that are outside the plot. More...
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void | updateIsActive () |
| Keeps the behavior active flag current. More...
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void | inactivate () |
| Inactivates this behavior. More...
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void | setSaveAbsoluteDensity (int iType, int iDeadCode, boolean bUse) throws ModelException |
| Sets the save absolute density attribute for a type. More...
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void | setSaveRelativeDensity (int iType, boolean bUse) throws ModelException |
| Sets the save relative density attribute for a type. More...
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void | setSaveAbsoluteBasalArea (int iType, int iDeadCode, boolean bUse) throws ModelException |
| Sets the save absolute basal area attribute for a type. More...
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void | setSaveRelativeBasalArea (int iType, boolean bUse) throws ModelException |
| Sets the save relative basal area attribute for a type. More...
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boolean | getSaveAbsoluteBasalArea (int iType, int iDeadCode) throws ModelException |
| Gets whether or not absolute basal area is saved for a tree type. More...
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boolean | getSaveRelativeBasalArea (int iType) throws ModelException |
| Gets whether or not relative basal area is saved for a tree type. More...
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boolean | getSaveAbsoluteDensity (int iType, int iDeadCode) throws ModelException |
| Gets whether or not absolute density is saved for a tree type. More...
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boolean | getSaveRelativeDensity (int iType) throws ModelException |
| Gets whether or not relative density is saved for a tree type. More...
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void | writeXML (BufferedWriter jOut, TreePopulation oPop) throws ModelException |
| Writes the parameter file data for short output. More...
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Subplot | addShortOutputSubplot (String sName) |
| Creates a subplot for short output. More...
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void | addShortOutputSubplot (Subplot oSubplot) |
| Adds a subplot for short output. More...
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void | clearShortOutputSubplots () |
| Clears subplot data. More...
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float | getShortSubplotXCellLength () |
| Gets the subplot X cell length. More...
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void | setShortSubplotXCellLength (float fLength) |
| Sets the subplot X cell length. More...
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float | getShortSubplotYCellLength () |
| Gets the subplot Y cell length. More...
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void | setShortSubplotYCellLength (float fLength) |
| Sets the subplot Y cell length. More...
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int | getNumberOfShortSubplots () |
| Gets the number of subplots. More...
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Subplot | getShortSubplot (int iIndex) |
| Gets a subplot. More...
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void | setShortOutputFileName (String sFilename) |
| Sets the short output filename. More...
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String | getShortOutputFileName () |
| Gets the short output filename. More...
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boolean | isActive () |
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void | callSetupDialog (JDialog jParent, MainWindow oMain) |
| Calls the output setup dialog. More...
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void | writeParametersToTextFile (FileWriter jOut, TreePopulation oPop) throws IOException |
| Override to not do anything. More...
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GUIManager | getGUIManager () |
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| Behavior (GUIManager oManager, BehaviorTypeBase oParent, String sDescriptor, String sParFileTag, String sXMLRootString, String sHelpFileString) |
| Constructor. More...
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abstract void | validateData (TreePopulation oPop) throws ModelException |
| Override this to implement data checking. More...
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void | callSetupDialog (JDialog jParent, MainWindow oMain) |
| Override this to call a specific setup dialog for this behavior. More...
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int | getNumberOfDataObjects () |
| Gets the number of managed data objects. More...
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ModelData | getDataObject (int iInd) |
| Gets the managed data object at a particular index. More...
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void | validate () throws ModelException |
| Behavior performs an internal check to make sure its settings are consistent and logical. More...
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void | setListPosition (int iListPosition) throws ModelException |
| Sets the behavior list position. More...
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int | getListPosition () |
| Gets the behavior list position. More...
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String | getXMLParametersRoot () |
| Gets the XML parameter root string. More...
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int | getNumberNewDataMembers () |
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DataMember | getNewTreeDataMember (int iIndex) throws ModelException |
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void | setCanApplyTo (int iType, boolean bCanApply) |
| Sets whether this behavior can apply to a given tree type. More...
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String | getParameterFileBehaviorName () |
| Gets the parameter file name for this behavior. More...
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double | getVersion () |
| Gets behavior's parameter file version. More...
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double | getMinimumVersion () |
| Gets behavior's parameter file minimum version. More...
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String | getDescriptor () |
| Gets the descriptor string. More...
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String | getHelpFileString () |
| Gets the help file UD. More...
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void | setDescriptor (String s) |
| Sets the descriptor string. More...
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int | getNumberOfCombos () |
| Gets the number of species/type combos to which this behavior applies. More...
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int | getNumberOfGrids () |
| Gets the number of grids to which this behavior applies. More...
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void | deleteSpeciesTypeCombo (int iIndex) throws ModelException |
| Deletes the SpeciesTypeCombo at the given index. More...
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void | deleteSpeciesTypeCombo (SpeciesTypeCombo oCombo) throws ModelException |
| Deletes a SpeciesTypeCombo. More...
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void | clearSpeciesTypeCombos () |
| Empties the species/type combo list. More...
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SpeciesTypeCombo | getSpeciesTypeCombo (int iIndex) throws ModelException |
| Returns the SpeciesTypeCombo at the given index of the species/type combo list. More...
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Grid | getGrid (int iIndex) throws ModelException |
| Returns the Grid at the given index of the grid applies to list. More...
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ModelData | getRequiredData (int iIndex) |
| Returns the required data object at a given index. More...
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int | getNumberOfRequiredDataObjects () |
| Gets the number of required data objects for this behavior. More...
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void | addSpeciesTypeCombo (SpeciesTypeCombo oCombo) throws ModelException |
| Adds a new species/type combo to the list to which this behavior applies. More...
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void | addGrid (Grid oGrid, boolean bReplace) |
| Adds a new Grid to the list to which this behavior applies. More...
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void | addRequiredData (ModelData oData) |
| Adds a piece of required data to the list. More...
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boolean [] | getWhichSpeciesUsed (TreePopulation oPop) |
| Returns which species to which this behavior is applied. More...
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boolean | setVectorValueByXMLTag (String sXMLTag, String sXMLParentTag, ArrayList< String > p_oData, String[] p_sChildXMLTags, boolean[] p_bAppliesTo, Attributes oParentAttributes, Attributes[] p_oAttributes) throws ModelException |
| Sets a data vector's value. More...
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boolean | setSingleValueByXMLTag (String sXMLTag, String sXMLParentTag, Attributes oAttributes, Object oData) throws ModelException |
| Sets a data object's value. More...
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ModelData | findObjectByXMLTag (String sXMLTag) |
| Finds an object based on its XML tag. More...
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void | copySpecies (int iSpeciesCopyFrom, int iSpeciesCopyTo) throws ModelException |
| Copies one species to another. More...
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void | writeXML (BufferedWriter jOut, TreePopulation oPop) throws ModelException |
| Writes the XML data to a parameter file for the behaviors owned by this object. More...
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void | writeSpeciesSpecificValue (BufferedWriter jOut, ModelVector p_oData, TreePopulation oPop) throws java.io.IOException, ModelException |
| Writes a set of species-specific float values to a parameter file. More...
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void | writeSpeciesSpecificValue (BufferedWriter jOut, ModelVector p_oData, TreePopulation oPop, boolean[] p_bFlags) throws java.io.IOException, ModelException |
| Writes a set of species-specific values to a parameter file for a certain subset of species. More...
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void | readXMLParentTag (String sXMLTag, Attributes oAttributes) throws ModelException |
| Accepts an XML parent tag (empty, no data) from the parser. More...
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void | changeOfSpeciesName (String sOldSpecies, String sNewSpecies) |
| Performs any necessary tasks associated with changing the name of a species. More...
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void | changeOfSpecies (int iOldNumSpecies, int[] p_iIndexer, String[] p_sNewSpecies) throws ModelException |
| Triggered when there is a change in the species list. More...
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boolean | getMustHaveTrees () |
| Gets whether this behavior must have trees. More...
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ModelData | findObjectByDescriptor (String sDescriptor) |
| Finds an object based on its descriptor. More...
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void | writeBehaviorNode (BufferedWriter out, TreePopulation oPop) throws ModelException |
| Writes behavior tags to the parameter file. More...
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ArrayList< BehaviorParameterDisplay > | formatDataForDisplay (TreePopulation oPop) |
| Formats data for display in a set of JTables. More...
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String | getAppliedToForDisplay (TreePopulation oPop) |
| Get which species/types this behavior applies to, in a display-friendly format truncated to 250 chars. More...
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void | readDataFromDisplay (ArrayList< BehaviorParameterDisplay > oData, TreePopulation oPop) throws ModelException |
| Reads in data from the parameter display window. More...
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boolean | canBeDuplicated () |
| Whether or not this behavior can be duplicated in the run. More...
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void | endOfParameterFileRead () |
| Called at the end of the parameter file read process. More...
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void | changeOfPlotResolution (float fOldX, float fOldY, float fNewX, float fNewY) throws ModelException |
| Performs any tasks associated with a change of plot resolution. More...
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setupType | getSetupType () |
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void | writeParametersToTextFile (FileWriter jOut, TreePopulation oPop) throws IOException |
| Writes the parameters for the behavior to file, using the same system as the basic parameter display and entry system. More...
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static void | setVectorValues (ModelVector oData, Float[] p_fValuesToSet, boolean[] p_bAppliesTo) |
| Sets the values for vector variables. More...
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static void | setVectorValues (ModelVector oData, Float[] p_fValuesToSet) |
| Sets the values for vector variables. More...
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static void | setVectorValues (ModelVector oData, Double[] p_fValuesToSet, boolean[] p_bAppliesTo) |
| Sets the values for vector variables. More...
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static void | setVectorValues (ModelVector oData, Double[] p_fValuesToSet) |
| Sets the values for vector variables. More...
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static void | setVectorValues (ModelVector oData, Integer[] p_iValuesToSet, boolean[] p_bAppliesTo) |
| Sets the values for vector variables. More...
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static void | setVectorValues (ModelVector oData, String[] p_sValuesToSet) |
| Sets the values for vector variables. More...
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static void | setVectorValues (ModelVector oData, String[] p_sValuesToSet, boolean[] p_bAppliesTo) |
| Sets the values for vector variables. More...
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static void | setVectorValues (ModelVector oData, Integer[] p_iValuesToSet) |
| Sets the values for vector variables. More...
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static void | setVectorValues (ModelVector p_oData, ArrayList< String > p_oValuesToSet, boolean[] p_bAppliesTo) throws ModelException |
| Sets the values for vector variables. More...
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static void | writeDataToFile (BufferedWriter ojOut, ModelData oData) throws java.io. IOException |
| Writes a piece of data to an XML file. More...
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static Object [] | formatBlankHeaderRow (Object[][] p_oTable) |
| Creates a blank header row for a table. More...
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static Object [][] | formatDataAsComboBox (Object[][] p_oExisting, ModelEnum oToFormat) |
| Adds a value with combo box formatting to an Object array for display in a JTable. More...
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static String | formatComboBoxString (ModelEnum oToFormat) |
| Formats a combo box string from a ModelEnum. More...
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static void | addDataObjectToDisplayArrays (ModelData p_oDataObject, ArrayList< ModelData > p_oSingles, ArrayList< ArrayList< SpeciesSpecific >> p_oSpeciesSpecific, boolean[] p_bAppliesTo) |
| Adds a data object to the arrays which will eventually display run parameters in a set of tables. More...
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static Object [][] | addDataToArray (Object[][] p_oExistingArray, Object[] p_oAddArray) |
| Adds an Object array to an existing Object array. More...
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static Object [][] | formatDataForTable (Object[][] p_oExisting, ModelFloat oToFormat) |
| Formats and adds a value into an Object array suitable for placing in a JTable. More...
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static Object [][] | formatDataForTable (Object[][] p_oExisting, ModelInt oToFormat) |
| Formats and adds a value into an Object array suitable for placing in a JTable. More...
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static Object [][] | formatDataForTable (Object[][] p_oExisting, ModelString oToFormat) |
| Formats and adds a value into an Object array suitable for placing in a JTable. More...
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static Object [][] | formatDataForTable (Object[][] p_oExisting, ModelVector oToFormat) |
| Formats a vector of values into an object array and adds it to another Object array suitable for placing in a JTable. More...
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static Object [][] | formatDataForTable (Object[][] p_oExisting, ModelVector oToFormat, boolean[] p_bWhichSpecies) |
| Formats a vector of values into a plain vector suitable for placing in a JTable and adds it to a vector of vectors at the end. More...
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static Object [] | formatSpeciesHeaderRow (boolean[] p_bUsed, TreePopulation oPop) |
| Creates an object array of strings consisting of species names, suitable for including in the parameter entry table. More...
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static void | ensureSize (ArrayList<?> list, int size) |
| Ensure an ArrayList is at least a specific size. More...
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boolean | m_bMustHaveTrees = true |
| If true, and a tree has no species/type combos, it automatically becomes disabled. More...
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void | setSingleValue (ModelData oDataMember, Object oData) throws ModelException |
| Sets the value of a single data member. More...
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BehaviorParameterDisplay | formatTable (ArrayList< ModelData > p_oSingles, ArrayList< ArrayList< SpeciesSpecific >> p_oSpeciesSpecific, TreePopulation oPop) |
| Turns vector groups of data objects into a set of tables for display. More...
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static boolean | boolArraysEqual (boolean[] p_bArrayOne, boolean[] p_bArrayTwo) |
| Tests two boolean arrays for equality. More...
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